Detection and characterisation of novel bocavirus (genus Bocaparvovirus) and gastroenteritis viruses from asymptomatic pigs in Ireland
Identifieur interne : 001834 ( Main/Exploration ); précédent : 001833; suivant : 001835Detection and characterisation of novel bocavirus (genus Bocaparvovirus) and gastroenteritis viruses from asymptomatic pigs in Ireland
Auteurs : Lynda Gunn [Irlande (pays)] ; Patrick James Collins [Irlande (pays)] ; Séamus Fanning [Irlande (pays)] ; John Mckillen [Royaume-Uni] ; John Morgan [Irlande (pays)] ; Anthony Staines [Irlande (pays)] ; Helen O'Shea [Irlande (pays)]Source :
- Infection Ecology & Epidemiology [ 2000-8686 ] ; 2015.
Abstract
Livestock animals have been the assumed source of several human epidemics in recent years, for example, influenza H1N1, rotavirus G8/G9, and MERS-CoV. Surveillance of novel viruses in animals is essential to evaluate the risk to human and animal health and to determine any economic impact, for example, failure to thrive. There is a paucity of data regarding detection and characterisation of gastroenteritis viruses, particularly novel viruses, in porcines in Ireland. Recently, a number of small novel porcine DNA viruses have emerged globally, for example, torque teno sus virus, porcine bocavirus, and parvoviruses 2 & 4, and little is known about the biology and potential pathogenicity of these viruses. Bocaparvovirus is a genetically distinct group of viruses which has been recently detected in humans and animals.
In this study, the presence of gastroenteritis viruses (rotavirus A, porcine circovirus, adenovirus, and porcine bocavirus) was investigated in a selection of archived faecal samples from asymptomatic piglets from a commercial farm in Ireland. A total of 104 specimens were pooled and screened using conventional molecular techniques (PCR and RT-PCR), a subset of specimens (n=44) were then examined individually. Viral diversity was then investigated using statistical and phylogenetic techniques.
Initial screening showed a high prevalence of PBoV in this farm, with the formation of three distinct groups in phylogenetic analysis. Other viruses were also investigated in this study with the first report of PCV, PAdV and lineage I G5 RVA in Ireland. Some specimens contained >1 virus, with statistical analysis indicating a strong correlation for mixed infections of PBoV and PAdV on this farm.
Investigating the diversity of circulating enteric viruses on Irish porcine farms is important to improve the prophylactic tools available and to facilitate the early detection of changes in circulating viruses.
Url:
DOI: 10.3402/iee.v5.27270
PubMed: 26065833
PubMed Central: 4462827
Affiliations:
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last="Collins">Patrick James Collins</name><affiliation wicri:level="1"><nlm:aff id="AF0001">Department of Biological Sciences, Cork Institute of Technology, Cork, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Department of Biological Sciences, Cork Institute of Technology, Cork</wicri:regionArea><wicri:noRegion>Cork</wicri:noRegion></affiliation></author><author><name sortKey="Fanning, Seamus" sort="Fanning, Seamus" uniqKey="Fanning S" first="Séamus" last="Fanning">Séamus Fanning</name><affiliation wicri:level="1"><nlm:aff id="AF0002">School of Public Health, Physio & Pop Sc, Science Centre – South, Dublin 4, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>School of Public Health, Physio & Pop Sc, Science Centre – South, Dublin 4</wicri:regionArea><wicri:noRegion>Dublin 4</wicri:noRegion></affiliation></author><author><name sortKey="Mckillen, John" sort="Mckillen, John" uniqKey="Mckillen J" first="John" last="Mckillen">John Mckillen</name><affiliation wicri:level="1"><nlm:aff id="AF0003">Veterinary Sciences Division, Agri-Food and Biosciences Institute, Belfast, United Kingdom</nlm:aff><country xml:lang="fr">Royaume-Uni</country><wicri:regionArea>Veterinary Sciences Division, Agri-Food and Biosciences Institute, Belfast</wicri:regionArea><wicri:noRegion>Belfast</wicri:noRegion></affiliation></author><author><name sortKey="Morgan, John" sort="Morgan, John" uniqKey="Morgan J" first="John" last="Morgan">John Morgan</name><affiliation wicri:level="1"><nlm:aff id="AF0004">School of Microbiology, University College Cork, Cork, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>School of Microbiology, University College Cork, Cork</wicri:regionArea><wicri:noRegion>Cork</wicri:noRegion></affiliation></author><author><name sortKey="Staines, Anthony" sort="Staines, Anthony" uniqKey="Staines A" first="Anthony" last="Staines">Anthony Staines</name><affiliation wicri:level="1"><nlm:aff id="AF0005">School of Nursing, Dublin City University, Dublin 9, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>School of Nursing, Dublin City University, Dublin 9</wicri:regionArea><wicri:noRegion>Dublin 9</wicri:noRegion></affiliation></author><author><name sortKey="O Shea, Helen" sort="O Shea, Helen" uniqKey="O Shea H" first="Helen" last="O'Shea">Helen O'Shea</name><affiliation wicri:level="1"><nlm:aff id="AF0001">Department of Biological Sciences, Cork Institute of Technology, Cork, Ireland</nlm:aff><country xml:lang="fr">Irlande (pays)</country><wicri:regionArea>Department of Biological Sciences, Cork Institute of Technology, Cork</wicri:regionArea><wicri:noRegion>Cork</wicri:noRegion></affiliation></author></analytic><series><title level="j">Infection Ecology & Epidemiology</title><idno type="eISSN">2000-8686</idno><imprint><date when="2015">2015</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en"><sec id="st1"><title>Background</title><p>Livestock animals have been the assumed source of several human epidemics in recent years, for example, influenza H1N1, rotavirus G8/G9, and MERS-CoV. Surveillance of novel viruses in animals is essential to evaluate the risk to human and animal health and to determine any economic impact, for example, failure to thrive. There is a paucity of data regarding detection and characterisation of gastroenteritis viruses, particularly novel viruses, in porcines in Ireland. Recently, a number of small novel porcine DNA viruses have emerged globally, for example, torque teno sus virus, porcine bocavirus, and parvoviruses 2 & 4, and little is known about the biology and potential pathogenicity of these viruses. Bocaparvovirus is a genetically distinct group of viruses which has been recently detected in humans and animals.</p></sec><sec id="st2"><title>Methods</title><p>In this study, the presence of gastroenteritis viruses (rotavirus A, porcine circovirus, adenovirus, and porcine bocavirus) was investigated in a selection of archived faecal samples from asymptomatic piglets from a commercial farm in Ireland. A total of 104 specimens were pooled and screened using conventional molecular techniques (PCR and RT-PCR), a subset of specimens (n=44) were then examined individually. Viral diversity was then investigated using statistical and phylogenetic techniques.</p></sec><sec id="st3"><title>Results</title><p>Initial screening showed a high prevalence of PBoV in this farm, with the formation of three distinct groups in phylogenetic analysis. Other viruses were also investigated in this study with the first report of PCV, PAdV and lineage I G5 RVA in Ireland. Some specimens contained >1 virus, with statistical analysis indicating a strong correlation for mixed infections of PBoV and PAdV on this farm.</p></sec><sec id="st4"><title>Conclusion</title><p>Investigating the diversity of circulating enteric viruses on Irish porcine farms is important to improve the prophylactic tools available and to facilitate the early detection of changes in circulating viruses.</p></sec></div></front><back><div1 type="bibliography"><listBibl><biblStruct><analytic><author><name sortKey="Kahn, Lh" uniqKey="Kahn L">LH Kahn</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Pulliam, Jrc" uniqKey="Pulliam J">JRC Pulliam</name></author></analytic></biblStruct><biblStruct><analytic><author><name sortKey="Allander, T" uniqKey="Allander T">T Allander</name></author><author><name sortKey="Tammi, Mt" uniqKey="Tammi M">MT Tammi</name></author><author><name sortKey="Eriksson, M" uniqKey="Eriksson M">M Eriksson</name></author><author><name 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Fang</name></author><author><name sortKey="Ma, J" uniqKey="Ma J">J Ma</name></author><author><name sortKey="Song, T" uniqKey="Song T">T Song</name></author><author><name sortKey="Zhang, R" uniqKey="Zhang R">R Zhang</name></author></analytic></biblStruct></listBibl></div1></back></TEI><affiliations><list><country><li>Irlande (pays)</li><li>Royaume-Uni</li></country></list><tree><country name="Irlande (pays)"><noRegion><name sortKey="Gunn, Lynda" sort="Gunn, Lynda" uniqKey="Gunn L" first="Lynda" last="Gunn">Lynda Gunn</name></noRegion><name sortKey="Collins, Patrick James" sort="Collins, Patrick James" uniqKey="Collins P" first="Patrick James" last="Collins">Patrick James Collins</name><name sortKey="Fanning, Seamus" sort="Fanning, Seamus" uniqKey="Fanning S" first="Séamus" last="Fanning">Séamus Fanning</name><name sortKey="Morgan, John" sort="Morgan, John" uniqKey="Morgan J" first="John" last="Morgan">John Morgan</name><name sortKey="O Shea, Helen" sort="O Shea, Helen" uniqKey="O Shea H" first="Helen" last="O'Shea">Helen O'Shea</name><name sortKey="Staines, Anthony" sort="Staines, Anthony" uniqKey="Staines A" first="Anthony" last="Staines">Anthony Staines</name></country><country name="Royaume-Uni"><noRegion><name sortKey="Mckillen, John" sort="Mckillen, John" uniqKey="Mckillen J" first="John" last="Mckillen">John Mckillen</name></noRegion></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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